PoplarV1, Main, Exploration, bibRecord, 003A45

Three orthologs in rice, Arabidopsis, and Populus encoding starch branching enzymes (SBEs) are different from other SBE gene families in plants.

Identifieur interne : 003A45 ( Main/Exploration ); précédent : 003A44; suivant : 003A46

Three orthologs in rice, Arabidopsis, and Populus encoding starch branching enzymes (SBEs) are different from other SBE gene families in plants.

Auteurs : Yuepeng Han [États-Unis] ; Feng-Jie Sun ; Sergio Rosales-Mendoza ; Schuyler S. Korban

Source :

Gene [ 0378-1119 ] ; 2007.

RBID : pubmed:17698298

Descripteurs français

English descriptors

KwdEn :
- 1,4-alpha-Glucan Branching Enzyme (genetics), Amino Acid Sequence (MeSH), Arabidopsis (classification), Arabidopsis (enzymology), Arabidopsis (genetics), Consensus Sequence (MeSH), Conserved Sequence (MeSH), DNA, Complementary (MeSH), Gene Expression Profiling (MeSH), Hordeum (enzymology), Hordeum (genetics), Isoenzymes (genetics), Molecular Sequence Data (MeSH), Multigene Family (MeSH), Oryza (classification), Oryza (enzymology), Oryza (genetics), Phylogeny (MeSH), Populus (classification), Populus (enzymology), Populus (genetics), Protein Structure, Tertiary (MeSH), Sequence Homology, Amino Acid (MeSH), Starch (biosynthesis), Triticum (enzymology), Triticum (genetics), Zea mays (enzymology), Zea mays (genetics).
MESH :
- chemical , biosynthesis : Starch.
- chemical , genetics : 1,4-alpha-Glucan Branching Enzyme, Isoenzymes.
- classification : Arabidopsis, Oryza, Populus.
- enzymology : Arabidopsis, Hordeum, Oryza, Populus, Triticum, Zea mays.
- genetics : Arabidopsis, Hordeum, Oryza, Populus, Triticum, Zea mays.
- Amino Acid Sequence, Consensus Sequence, Conserved Sequence, DNA, Complementary, Gene Expression Profiling, Molecular Sequence Data, Multigene Family, Phylogeny, Protein Structure, Tertiary, Sequence Homology, Amino Acid.

Abstract

Starch branching enzymes (SBEs) play important roles in plant starch synthesis. Three orthologs encoding SBEs in rice, Arabidopsis thaliana, and Populus trichocarpa are described. Putative amino acid sequences of these three SBE genes show approximately 30% identity to those of SBEI and SBEII from plants such as maize, barley, and wheat. More interestingly, they share approximately 31% amino acid sequence identity with those of glycogen-branching enzymes from such animals as mouse, horse, and monkey. The three genes have similar genomic structures, but their structural features are quite different from those of genes of both SBEI and SBEII families in plants. Based on phylogenetic analysis and genomic structure comparison, it is proposed that the three SBE genes represent a new family of SBEs.

DOI: 10.1016/j.gene.2007.06.026
PubMed: 17698298

Affiliations:

États-Unis

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Le document en format XML

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<author><name sortKey="Sun, Feng Jie" sort="Sun, Feng Jie" uniqKey="Sun F" first="Feng-Jie" last="Sun">Feng-Jie Sun</name>
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<author><name sortKey="Rosales Mendoza, Sergio" sort="Rosales Mendoza, Sergio" uniqKey="Rosales Mendoza S" first="Sergio" last="Rosales-Mendoza">Sergio Rosales-Mendoza</name>
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<author><name sortKey="Korban, Schuyler S" sort="Korban, Schuyler S" uniqKey="Korban S" first="Schuyler S" last="Korban">Schuyler S. Korban</name>
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<author><name sortKey="Rosales Mendoza, Sergio" sort="Rosales Mendoza, Sergio" uniqKey="Rosales Mendoza S" first="Sergio" last="Rosales-Mendoza">Sergio Rosales-Mendoza</name>
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<author><name sortKey="Korban, Schuyler S" sort="Korban, Schuyler S" uniqKey="Korban S" first="Schuyler S" last="Korban">Schuyler S. Korban</name>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>1,4-alpha-Glucan Branching Enzyme (genetics)</term>
<term>Amino Acid Sequence (MeSH)</term>
<term>Arabidopsis (classification)</term>
<term>Arabidopsis (enzymology)</term>
<term>Arabidopsis (genetics)</term>
<term>Consensus Sequence (MeSH)</term>
<term>Conserved Sequence (MeSH)</term>
<term>DNA, Complementary (MeSH)</term>
<term>Gene Expression Profiling (MeSH)</term>
<term>Hordeum (enzymology)</term>
<term>Hordeum (genetics)</term>
<term>Isoenzymes (genetics)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Multigene Family (MeSH)</term>
<term>Oryza (classification)</term>
<term>Oryza (enzymology)</term>
<term>Oryza (genetics)</term>
<term>Phylogeny (MeSH)</term>
<term>Populus (classification)</term>
<term>Populus (enzymology)</term>
<term>Populus (genetics)</term>
<term>Protein Structure, Tertiary (MeSH)</term>
<term>Sequence Homology, Amino Acid (MeSH)</term>
<term>Starch (biosynthesis)</term>
<term>Triticum (enzymology)</term>
<term>Triticum (genetics)</term>
<term>Zea mays (enzymology)</term>
<term>Zea mays (genetics)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>1,4-alpha-Glucan branching enzyme (génétique)</term>
<term>ADN complémentaire (MeSH)</term>
<term>Amidon (biosynthèse)</term>
<term>Analyse de profil d'expression de gènes (MeSH)</term>
<term>Arabidopsis (classification)</term>
<term>Arabidopsis (enzymologie)</term>
<term>Arabidopsis (génétique)</term>
<term>Données de séquences moléculaires (MeSH)</term>
<term>Famille multigénique (MeSH)</term>
<term>Hordeum (enzymologie)</term>
<term>Hordeum (génétique)</term>
<term>Isoenzymes (génétique)</term>
<term>Oryza (classification)</term>
<term>Oryza (enzymologie)</term>
<term>Oryza (génétique)</term>
<term>Phylogenèse (MeSH)</term>
<term>Populus (classification)</term>
<term>Populus (enzymologie)</term>
<term>Populus (génétique)</term>
<term>Similitude de séquences d'acides aminés (MeSH)</term>
<term>Structure tertiaire des protéines (MeSH)</term>
<term>Séquence consensus (MeSH)</term>
<term>Séquence conservée (MeSH)</term>
<term>Séquence d'acides aminés (MeSH)</term>
<term>Triticum (enzymologie)</term>
<term>Triticum (génétique)</term>
<term>Zea mays (enzymologie)</term>
<term>Zea mays (génétique)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="biosynthesis" xml:lang="en"><term>Starch</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>1,4-alpha-Glucan Branching Enzyme</term>
<term>Isoenzymes</term>
</keywords>
<keywords scheme="MESH" qualifier="biosynthèse" xml:lang="fr"><term>Amidon</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Arabidopsis</term>
<term>Oryza</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="enzymologie" xml:lang="fr"><term>Arabidopsis</term>
<term>Hordeum</term>
<term>Oryza</term>
<term>Populus</term>
<term>Triticum</term>
<term>Zea mays</term>
</keywords>
<keywords scheme="MESH" qualifier="enzymology" xml:lang="en"><term>Arabidopsis</term>
<term>Hordeum</term>
<term>Oryza</term>
<term>Populus</term>
<term>Triticum</term>
<term>Zea mays</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Arabidopsis</term>
<term>Hordeum</term>
<term>Oryza</term>
<term>Populus</term>
<term>Triticum</term>
<term>Zea mays</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>1,4-alpha-Glucan branching enzyme</term>
<term>Arabidopsis</term>
<term>Hordeum</term>
<term>Isoenzymes</term>
<term>Oryza</term>
<term>Populus</term>
<term>Triticum</term>
<term>Zea mays</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Consensus Sequence</term>
<term>Conserved Sequence</term>
<term>DNA, Complementary</term>
<term>Gene Expression Profiling</term>
<term>Molecular Sequence Data</term>
<term>Multigene Family</term>
<term>Phylogeny</term>
<term>Protein Structure, Tertiary</term>
<term>Sequence Homology, Amino Acid</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>ADN complémentaire</term>
<term>Analyse de profil d'expression de gènes</term>
<term>Données de séquences moléculaires</term>
<term>Famille multigénique</term>
<term>Phylogenèse</term>
<term>Similitude de séquences d'acides aminés</term>
<term>Structure tertiaire des protéines</term>
<term>Séquence consensus</term>
<term>Séquence conservée</term>
<term>Séquence d'acides aminés</term>
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<front><div type="abstract" xml:lang="en">Starch branching enzymes (SBEs) play important roles in plant starch synthesis. Three orthologs encoding SBEs in rice, Arabidopsis thaliana, and Populus trichocarpa are described. Putative amino acid sequences of these three SBE genes show approximately 30% identity to those of SBEI and SBEII from plants such as maize, barley, and wheat. More interestingly, they share approximately 31% amino acid sequence identity with those of glycogen-branching enzymes from such animals as mouse, horse, and monkey. The three genes have similar genomic structures, but their structural features are quite different from those of genes of both SBEI and SBEII families in plants. Based on phylogenetic analysis and genomic structure comparison, it is proposed that the three SBE genes represent a new family of SBEs.</div>
</front>
</TEI>
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<DateCompleted><Year>2007</Year>
<Month>10</Month>
<Day>24</Day>
</DateCompleted>
<DateRevised><Year>2015</Year>
<Month>11</Month>
<Day>19</Day>
</DateRevised>
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<JournalIssue CitedMedium="Print"><Volume>401</Volume>
<Issue>1-2</Issue>
<PubDate><Year>2007</Year>
<Month>Oct</Month>
<Day>15</Day>
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<Title>Gene</Title>
<ISOAbbreviation>Gene</ISOAbbreviation>
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<ArticleTitle>Three orthologs in rice, Arabidopsis, and Populus encoding starch branching enzymes (SBEs) are different from other SBE gene families in plants.</ArticleTitle>
<Pagination><MedlinePgn>123-30</MedlinePgn>
</Pagination>
<Abstract><AbstractText>Starch branching enzymes (SBEs) play important roles in plant starch synthesis. Three orthologs encoding SBEs in rice, Arabidopsis thaliana, and Populus trichocarpa are described. Putative amino acid sequences of these three SBE genes show approximately 30% identity to those of SBEI and SBEII from plants such as maize, barley, and wheat. More interestingly, they share approximately 31% amino acid sequence identity with those of glycogen-branching enzymes from such animals as mouse, horse, and monkey. The three genes have similar genomic structures, but their structural features are quite different from those of genes of both SBEI and SBEII families in plants. Based on phylogenetic analysis and genomic structure comparison, it is proposed that the three SBE genes represent a new family of SBEs.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Han</LastName>
<ForeName>Yuepeng</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>Department of Natural Resources and Environmental Sciences, University of Illinois, Urbana, Illinois 61801, USA.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Sun</LastName>
<ForeName>Feng-Jie</ForeName>
<Initials>FJ</Initials>
</Author>
<Author ValidYN="Y"><LastName>Rosales-Mendoza</LastName>
<ForeName>Sergio</ForeName>
<Initials>S</Initials>
</Author>
<Author ValidYN="Y"><LastName>Korban</LastName>
<ForeName>Schuyler S</ForeName>
<Initials>SS</Initials>
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<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D003160">Comparative Study</PublicationType>
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<MedlineJournalInfo><Country>Netherlands</Country>
<MedlineTA>Gene</MedlineTA>
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<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
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<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D007527">Isoenzymes</NameOfSubstance>
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<Chemical><RegistryNumber>9005-25-8</RegistryNumber>
<NameOfSubstance UI="D013213">Starch</NameOfSubstance>
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<Chemical><RegistryNumber>EC 2.4.1.18</RegistryNumber>
<NameOfSubstance UI="D015061">1,4-alpha-Glucan Branching Enzyme</NameOfSubstance>
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<MeshHeadingList><MeshHeading><DescriptorName UI="D015061" MajorTopicYN="N">1,4-alpha-Glucan Branching Enzyme</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
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<MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName>
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<QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName>
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</MeshHeading>
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<MeshHeading><DescriptorName UI="D014908" MajorTopicYN="N">Triticum</DescriptorName>
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<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
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<MeshHeading><DescriptorName UI="D003313" MajorTopicYN="N">Zea mays</DescriptorName>
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<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
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<tree><noCountry><name sortKey="Korban, Schuyler S" sort="Korban, Schuyler S" uniqKey="Korban S" first="Schuyler S" last="Korban">Schuyler S. Korban</name>
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Three orthologs in rice, Arabidopsis, and Populus encoding starch branching enzymes (SBEs) are different from other SBE gene families in plants.

Three orthologs in rice, Arabidopsis, and Populus encoding starch branching enzymes (SBEs) are different from other SBE gene families in plants.

Source :

Descripteurs français

English descriptors

Abstract

Links toward previous steps (curation, corpus...)

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